To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TFBSTools")

In most cases, you don't need to download the package archive at all.

TFBSTools

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see TFBSTools.

Software Package for Transcription Factor Binding Site (TFBS) Analysis

Bioconductor version: 3.2

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites and transcription factor profile matrices.

Author: Ge Tan <ge.tan09 at imperial.ac.uk>

Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>

Citation (from within R, enter citation("TFBSTools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TFBSTools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TFBSTools")

PDF		Transcription factor binding site (TFBS) analysis with the "TFBSTools" package
PDF		Reference Manual
Text		NEWS

biocViews	Alignment, GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version	1.8.3
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-2
Depends	R (>= 3.2.2)
Imports	Biostrings(>= 2.36.4), RSQLite (>= 1.0.0), seqLogo(>= 1.34.0), GenomicRanges(>= 1.20.6), caTools (>= 1.17.1), XVector(>= 0.8.0), rtracklayer(>= 1.28.10), BSgenome(>= 1.36.3), S4Vectors(>= 0.6.5), IRanges(>= 2.2.7), methods, gtools (>= 3.5.0), CNEr(>= 1.4.0), BiocParallel(>= 1.2.21), DirichletMultinomial(>= 1.10.0), TFMPvalue (>= 0.0.5), BiocGenerics(>= 0.14.0), XML (>= 3.98-1.3), grid, Biobase(>= 2.28), GenomeInfoDb(>= 1.6.1)
LinkingTo
Suggests	JASPAR2014(>= 1.4.0), RUnit (>= 0.4.29), BiocStyle(>= 1.7.7), knitr (>= 1.11)
SystemRequirements
Enhances
URL	https://bitbucket.org/ge11232002/tfbstools
BugReports	https://bitbucket.org/ge11232002/tfbstools/issues
Depends On Me
Imports Me	MatrixRider
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	TFBSTools_1.8.3.tar.gz
Windows Binary	TFBSTools_1.8.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	TFBSTools_1.8.0.tgz
Mac OS X 10.9 (Mavericks)	TFBSTools_1.8.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/TFBSTools/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/TFBSTools/
Package Downloads Report	Download Stats

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