To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotifDb")

In most cases, you don't need to download the package archive at all.

MotifDb

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see MotifDb.

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: 3.2

More than 2000 annotated position frequency matrices from nine public sources, for multiple organisms.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("MotifDb")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotifDb")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")

biocViews	MotifAnnotation, Software
Version	1.12.1
In Bioconductor since	BioC 2.11 (R-2.15) (3.5 years)
License	Artistic-2.0 \| file LICENSE
Depends	R (>= 2.15.0), methods, BiocGenerics, S4Vectors, IRanges, Biostrings
Imports	rtracklayer
LinkingTo
Suggests	RUnit, seqLogo, MotIV
SystemRequirements
Enhances
URL
Depends On Me	motifbreakR
Imports Me	rTRMui
Suggests Me	DiffLogo, motifStack, PWMEnrich, rTRM, vtpnet
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	MotifDb_1.12.1.tar.gz
Windows Binary	MotifDb_1.12.1.zip
Mac OS X 10.6 (Snow Leopard)	MotifDb_1.12.0.tgz
Mac OS X 10.9 (Mavericks)	MotifDb_1.12.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/MotifDb/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/MotifDb/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: