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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")
In most cases, you don't need to download the package archive at all.
GenomicTuples
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This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GenomicTuples.
Representation and Manipulation of Genomic Tuples
Bioconductor version: 3.2
GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.
Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik and Herve Pages.
Maintainer: Peter Hickey <peter.hickey at gmail.com>
Citation (from within R,
enter citation("GenomicTuples")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicTuples")
| HTML | GenomicTuples: Classes and Methods | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataRepresentation, Infrastructure, Sequencing, Software |
| Version | 1.4.5 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.0), GenomicRanges(>= 1.19.47), GenomeInfoDb, BiocGenerics, methods |
| Imports | Rcpp (>= 0.11.2), S4Vectors, Biobase, IRanges, data.table |
| LinkingTo | Rcpp |
| Suggests | testthat, knitr, BiocStyle, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | www.github.com/PeteHaitch/GenomicTuples |
| BugReports | https://github.com/PeteHaitch/GenomicTuples/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GenomicTuples_1.4.5.tar.gz |
| Windows Binary | GenomicTuples_1.4.5.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | GenomicTuples_1.4.0.tgz |
| Mac OS X 10.9 (Mavericks) | GenomicTuples_1.4.5.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GenomicTuples/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/GenomicTuples/ |
| Package Downloads Report | Download Stats |
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