To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

In most cases, you don't need to download the package archive at all.

GOSemSim

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GOSemSim.

GO-terms Semantic Similarity Measures

Bioconductor version: 3.2

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Gondii, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Alexey Stukalov.

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("GOSemSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSemSim")

HTML		GO-terms Semantic Similarity Measures
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Clustering, GO, Network, Pathways, Software
Version	1.28.2
In Bioconductor since	BioC 2.4 (R-2.9) (7 years)
License	Artistic-2.0
Depends	R (>= 3.1.0)
Imports	Rcpp, AnnotationDbi, GO.db
LinkingTo	Rcpp
Suggests	DOSE, clusterProfiler, org.Hs.eg.db, knitr, BiocStyle, BiocInstaller
SystemRequirements
Enhances
URL	https://github.com/GuangchuangYu/GOSemSim
BugReports	https://github.com/GuangchuangYu/GOSemSim/issues
Depends On Me	tRanslatome
Imports Me	clusterProfiler, DOSE, Rcpi
Suggests Me	SemDist
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GOSemSim_1.28.2.tar.gz
Windows Binary	GOSemSim_1.28.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GOSemSim_1.28.1.tgz
Mac OS X 10.9 (Mavericks)	GOSemSim_1.28.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GOSemSim/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/GOSemSim/
Package Downloads Report	Download Stats

Documentation »

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