PasillaTranscriptExpr
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see PasillaTranscriptExpr.
Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.
Bioconductor version: 3.16
Provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.
Author: Malgorzata Nowicka [aut, cre]
Maintainer: Malgorzata Nowicka <gosia.nowicka at uzh.ch>
Citation (from within R, enter
citation("PasillaTranscriptExpr")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PasillaTranscriptExpr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PasillaTranscriptExpr")| Generation of transcript counts from pasilla dataset with kallisto | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, RNASeqData, SequencingData |
| Version | 1.26.0 |
| License | GPL (>= 3) |
| Depends | R (>= 3.3.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | rtracklayer, BiocStyle, knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DRIMSeq |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PasillaTranscriptExpr_1.26.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/PasillaTranscriptExpr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PasillaTranscriptExpr |
| Package Short Url | https://bioconductor.org/packages/PasillaTranscriptExpr/ |
| Package Downloads Report | Download Stats |