graph

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see graph.

graph: A package to handle graph data structures

Bioconductor version: 3.15

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("graph")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

Attributes for Graph Objects	PDF	R Script
clusterGraph and distGraph	PDF	R Script
Graph	PDF	R Script
Graph Design	PDF	R Script
graphBAM and MultiGraph classes	PDF	R Script
Reference Manual	PDF

Suggests	SparseM (>= 0.36), XML, RBGL, RUnit, cluster
Linking To
Enhances	Rgraphviz
Depends On Me	apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, EnrichmentBrowser, flowMerge, gaggle, GOstats, GraphAT, GRridge, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, pathRender, Pigengene, pkgDepTools, PoTRA, ppiData, RbcBook1, RBGL, RBioinf, RCyjs, Rgraphviz, ROntoTools, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me	alpine, AnnotationHubData, BgeeDB, BiocCheck, biocGraph, BiocOncoTK, BiocPkgTools, biocViews, BioPlex, bnem, CAMERA, Category, categoryCompare, chimeraviz, ChIPpeakAnno, CHRONOS, CytoML, dce, DEGraph, DEsubs, epiNEM, EventPointer, fgga, flowCL, flowClust, flowUtils, flowWorkspace, gage, GAPGOM, GeneNetworkBuilder, GenomicInteractionNodes, GOSim, GraphAT, graphite, hyperdraw, KEGGgraph, keggorthology, keggorthology, MIGSA, mirIntegrator, mnem, NCIgraph, NeighborNet, netresponse, OncoSimulR, ontoProc, openCyto, oposSOM, OrganismDbi, pathview, PFP, PhenStat, pkgDepTools, ppiStats, pwOmics, qpgraph, RCy3, RGraph2js, RpsiXML, rsbml, Rtreemix, SplicingGraphs, Streamer, trackViewer, VariantFiltering
Suggests Me	AnnotationDbi, DAPAR, DEGraph, EBcoexpress, ecolitk, gwascat, KEGGlincs, MLP, NetPathMiner, rBiopaxParser, RCX, rTRM, S4Vectors, SPIA, VariantTools
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	graph_1.74.0.tar.gz
Windows Binary	graph_1.74.0.zip (64-bit only)
macOS Binary (x86_64)	graph_1.74.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/graph
Bioc Package Browser	https://code.bioconductor.org/browse/graph/
Package Short Url	https://bioconductor.org/packages/graph/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.15	Source Archive