calm
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see calm.
Covariate Assisted Large-scale Multiple testing
Bioconductor version: 3.14
Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.
Author: Kun Liang [aut, cre]
Maintainer: Kun Liang <kun.liang at uwaterloo.ca>
citation("calm")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("calm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("calm")| Userguide for calm package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, Metabolomics, Microarray, MultipleComparison, Proteomics, RNASeq, Regression, Sequencing, Software, Transcriptomics |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL (>=2) |
| Depends | |
| Imports | mgcv, stats, graphics |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/k22liang/calm/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | calm_1.8.0.tar.gz |
| Windows Binary | calm_1.8.0.zip |
| macOS 10.13 (High Sierra) | calm_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/calm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/calm |
| Bioc Package Browser | https://code.bioconductor.org/browse/calm/ |
| Package Short Url | https://bioconductor.org/packages/calm/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |