enrichplot
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see enrichplot.
Visualization of Functional Enrichment Result
Bioconductor version: 3.13
The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. All the visualization methods are developed based on 'ggplot2' graphics.
Author: Guangchuang Yu [aut, cre] 
, Erqiang Hu [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
citation("enrichplot")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("enrichplot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("enrichplot")| enrichplot | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization |
| Version | 1.12.3 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | cowplot, DOSE(>= 3.16.0), ggplot2, ggraph, graphics, grid, igraph, methods, plyr, purrr, RColorBrewer, reshape2, stats, utils, scatterpie, shadowtext, GOSemSim, magrittr, ggtree |
| System Requirements | |
| URL | https://yulab-smu.top/biomedical-knowledge-mining-book/ |
| Bug Reports | https://github.com/GuangchuangYu/enrichplot/issues |
See More
| Suggests | clusterProfiler, dplyr, europepmc, ggupset, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggnewscale, ggrepel (>= 0.9.0), ggstar, treeio, scales, tidytree |
| Linking To | |
| Enhances | |
| Depends On Me | maEndToEnd |
| Imports Me | ChIPseeker, clusterProfiler, debrowser, ExpHunterSuite, MAGeCKFlute, meshes, multiSight, ReactomePA |
| Suggests Me | methylGSA |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | enrichplot_1.12.3.tar.gz |
| Windows Binary | enrichplot_1.12.3.zip |
| macOS 10.13 (High Sierra) | enrichplot_1.12.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/enrichplot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/enrichplot |
| Bioc Package Browser | https://code.bioconductor.org/browse/enrichplot/ |
| Package Short Url | https://bioconductor.org/packages/enrichplot/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |