To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spliceSites")

In most cases, you don't need to download the package archive at all.

spliceSites

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see spliceSites.

Manages align gap positions from RNA-seq data

Bioconductor version: 3.1

Align gap positions from RNA-seq data

Author: Wolfgang Kaisers

Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>

Citation (from within R, enter citation("spliceSites")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spliceSites")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceSites")

PDF	R Script	RNA-seq
PDF		Reference Manual

biocViews	DifferentialExpression, GeneExpression, Proteomics, RNASeq, Software
Version	1.6.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	GPL-2
Depends	methods, rbamtools, refGenome (>= 1.1.2), doBy, Biobase, Biostrings(>= 2.28.0), seqLogo
Imports	BiocGenerics
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	spliceSites_1.6.0.tar.gz
Windows Binary	spliceSites_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	spliceSites_1.6.0.tgz
Mac OS X 10.9 (Mavericks)	spliceSites_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/spliceSites/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/spliceSites/
Package Downloads Report	Download Stats

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