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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdmclass")
In most cases, you don't need to download the package archive at all.
pdmclass
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see pdmclass.
Classification of Microarray Samples using Penalized Discriminant Methods
Bioconductor version: 3.1
This package can be used to classify microarray data using one of three penalized regression methods; partial least squares, principal components regression, or ridge regression.
Author: James W. MacDonald, Debashis Ghosh, based in part on pls code of Mike Denham
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
Citation (from within R,
enter citation("pdmclass")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pdmclass")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pdmclass")
| R Script | pdmclass Overview | |
| Reference Manual |
Details
| biocViews | Classification, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (10.5 years) |
| License | Artistic-2.0 |
| Depends | Biobase(>= 1.4.22), R (>= 1.9.0), fibroEset, mda |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | oneChannelGUI |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pdmclass_1.40.0.tar.gz |
| Windows Binary | pdmclass_1.40.0.zip |
| Mac OS X 10.6 (Snow Leopard) | pdmclass_1.40.0.tgz |
| Mac OS X 10.9 (Mavericks) | pdmclass_1.40.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/pdmclass/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/pdmclass/ |
| Package Downloads Report | Download Stats |
Documentation »
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