To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("openCyto")

In most cases, you don't need to download the package archive at all.

openCyto

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see openCyto.

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: 3.1

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("openCyto")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("openCyto")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("openCyto")

HTML	R Script	An Introduction to the openCyto package
HTML	R Script	How to write a csv gating template
PDF		Reference Manual
Text		NEWS

biocViews	DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version	1.6.0
In Bioconductor since	BioC 2.13 (R-3.0) (2.5 years)
License	Artistic-2.0
Depends	flowWorkspace(>= 3.11.10)
Imports	methods, Biobase, gtools, flowCore(>= 1.31.17), flowViz, ncdfFlow(>= 2.11.34), flowStats(>= 3.23.7), flowClust, MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
LinkingTo	Rcpp
Suggests	flowWorkspaceData, knitr, testthat, utils, tools, parallel
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	flowCore
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	openCyto_1.6.0.tar.gz
Windows Binary	openCyto_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	openCyto_1.6.0.tgz
Mac OS X 10.9 (Mavericks)	openCyto_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/openCyto/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/openCyto/
Package Downloads Report	Download Stats

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