To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NCIgraph")

In most cases, you don't need to download the package archive at all.

NCIgraph

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see NCIgraph.

Pathways from the NCI Pathways Database

Bioconductor version: 3.1

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

Citation (from within R, enter citation("NCIgraph")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NCIgraph")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NCIgraph")

PDF	R Script	NCIgraph: networks from the NCI pathway integrated database as graphNEL objects.
PDF		Reference Manual

biocViews	GraphAndNetwork, Pathways, Software
Version	1.16.0
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	GPL-3
Depends	graph, R (>= 2.10.0)
Imports	graph, KEGGgraph, methods, RBGL, RCytoscape, R.methodsS3
LinkingTo
Suggests	Rgraphviz
SystemRequirements
Enhances	DEGraph
URL
Depends On Me
Imports Me	DEGraph
Suggests Me	DEGraph
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	NCIgraph_1.16.0.tar.gz
Windows Binary	NCIgraph_1.16.0.zip
Mac OS X 10.6 (Snow Leopard)	NCIgraph_1.16.0.tgz
Mac OS X 10.9 (Mavericks)	NCIgraph_1.16.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/NCIgraph/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/NCIgraph/
Package Downloads Report	Download Stats

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