- Home
- Bioconductor 2.8
- Software Packages
- xmapcore
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("xmapcore")
In most cases, you don't need to download the package archive at all.
xmapcore
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see xmapcore.
Core access to the xmap database (installed separately)
Bioconductor version: 2.8
xmapcore allows mapping between genetic features and any available Affymetrix Exon arrays for Homo Sapiens, Mus Musculus, Rattus Norvegicus and Schizosaccharomyces Pombe.
Author: Tim Yates <tyates at picr.man.ac.uk>
Maintainer: Tim Yates <tyates at picr.man.ac.uk>
Citation (from within R,
enter citation("xmapcore")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("xmapcore")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("xmapcore")
| cookbook.pdf | ||
| INSTALL.pdf | ||
| SplicingIndexExample.pdf | ||
| xmapcore.pdf | ||
| Reference Manual |
Details
| biocViews | Annotation, Bioinformatics, Microarray, OneChannel, ReportWriting, Software, Transcription, Visualization |
| Version | 1.6.2 |
| In Bioconductor since | BioC 2.6 (R-2.11) (6 years) |
| License | GPL-2 |
| Depends | R (>= 2.8.0), methods, IRanges |
| Imports | DBI, RMySQL (>= 0.6-0), digest, Biobase |
| LinkingTo | |
| Suggests | RUnit |
| SystemRequirements | |
| Enhances | |
| URL | http://xmap.picr.man.ac.uk http://www.bioconductor.org |
| Depends On Me | rnaSeqMap |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | xmapcore_1.6.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/xmapcore/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/xmapcore/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
