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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")
In most cases, you don't need to download the package archive at all.
Rgraphviz
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see Rgraphviz.
Provides plotting capabilities for R graph objects
Bioconductor version: 2.8
Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package. Users on all platforms must install graphviz; see the README file, available in the source distribution of this file, for details.
Author: Jeff Gentry <jgentry at jimmy.harvard.edu>, Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sfalcon at fhcrc.org>, Florian Hahne <fhahne at fhcrc.org>, Deepayan Sarkar <dsarkar at fhcrc.org>, Kasper Hansen <khansen at stat.berkeley.edu>
Maintainer: Kasper Hansen <khansen at stat.berkeley.edu>
Citation (from within R,
enter citation("Rgraphviz")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rgraphviz")
| newRgraphvizInterface.pdf | ||
| Rgraphviz.pdf | ||
| Reference Manual |
Details
| biocViews | GraphsAndNetworks, Software |
| Version | 1.30.1 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.6.0), methods, utils, graph, grid |
| Imports | graph, graphics, grDevices, grid, methods, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | Graphviz version >= 2.2 |
| Enhances | |
| URL | |
| Depends On Me | biocGraph, BioMVCClass, hyperdraw, KEGGgraph, nem, pathRender, TDARACNE |
| Imports Me | apComplex, biocGraph, DEGraph, GeneAnswers, nem |
| Suggests Me | altcdfenvs, BiocCaseStudies, Category, DEGraph, flowCore, geneplotter, globaltest, GOstats, GSVA, MLP, NCIgraph, NCIgraphData, oneChannelGUI, pkgDepTools, RBGL, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, topGO |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rgraphviz_1.30.1.tar.gz |
| Windows Binary | Rgraphviz_1.30.1.zip (32-bit only) |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rgraphviz/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/Rgraphviz/ |
| Package Downloads Report | Download Stats |
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