To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEDIPS")
In most cases, you don't need to download the package archive at all.
MEDIPS
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see MEDIPS.
MeDIP-Seq data analysis
Bioconductor version: 2.8
MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-Seq). Nevertheless, functionalities like the quality controls may be applied to other types of sequencing data (e.g. ChIP-Seq). MEDIPS adresses several aspects in the context of MeDIP-Seq data analysis.
Author: Lukas Chavez, Joern Dietrich
Maintainer: Lukas Chavez <chavez at molgen.mpg.de>
Citation (from within R,
enter citation("MEDIPS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEDIPS")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MEDIPS")
| MEDIPS.pdf | ||
| Reference Manual |
Details
| biocViews | ChIPseq, CpGIsland, DNAMethylation, DifferentialExpression, HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.12.0), BSgenome |
| Imports | Biostrings, BSgenome, graphics, gtools, IRanges, methods, stats, utils |
| LinkingTo | |
| Suggests | BSgenome, BSgenome.Hsapiens.UCSC.hg19 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MEDIPS_1.2.0.tar.gz |
| Windows Binary | MEDIPS_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MEDIPS/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/MEDIPS/ |
| Package Downloads Report | Download Stats |
Documentation »
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