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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")
In most cases, you don't need to download the package archive at all.
GOSemSim
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see GOSemSim.
GO-terms Semantic Similarity Measures
Bioconductor version: 2.8
Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.
Author: Guangchuang Yu
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R,
enter citation("GOSemSim")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOSemSim")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOSemSim")
| GOSemSim.pdf | ||
| Reference Manual |
Details
| biocViews | Anopheles_gambiae, Arabidopsis_thaliana, Bos_taurus, Caenorhabditis_elegans, Canis_familiaris, Clustering, Danio_rerio, Drosophila_melanogaster, Escherichia_coli, GO, Gallus_gallus, Homo_sapiens, Mus_musculus, Pan_troglodytes, Pathways, Plasmodium_falciparum, Rattus_norvegicus, Saccharomyces_cerevisiae, Software, Streptomyces_coelicolor, Sus_scrofa, Xenopus_laevis |
| Version | 1.10.2 |
| In Bioconductor since | BioC 2.4 (R-2.9) (7 years) |
| License | GPL-2 |
| Depends | |
| Imports | methods, AnnotationDbi, GO.db, org.Hs.eg.db, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Sco.eg.db, org.Ss.eg.db, org.Xl.eg.db |
| LinkingTo | |
| Suggests | clusterProfiler |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | clusterProfiler |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GOSemSim_1.10.2.tar.gz |
| Windows Binary | GOSemSim_1.10.2.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GOSemSim/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/GOSemSim/ |
| Package Downloads Report | Download Stats |
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