prada

Data analysis for cell-based functional assays

Bioconductor version: 2.7

Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening microscopy).

Author: Florian Hahne <florian.hahne at novartis.com>, Wolfgang Huber <huber at ebi.ac.uk>, Markus Ruschhaupt, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("prada")

To cite this package in a publication, start R and enter:

    citation("prada")

Documentation

PDF	R Script	Combining prada output and cellHTS
PDF	R Script	Removal of contaminants from FACS data
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Visualization
Depends	R (>= 2.1.0), Biobase, RColorBrewer, grid, methods, rrcov
Imports	Biobase, graphics, grDevices, grid, MASS, methods, RColorBrewer, rrcov, utils
Suggests	cellHTS, rflowcyt, tcltk
System Requirements
License	LGPL
URL	http://www.dkfz.de/mga/whuber, http://www.dkfz.de/LIFEdb
Depends On Me	cellHTS, domainsignatures, facsDorit, rflowcyt, RNAither
Imports Me	cellHTS2, rflowcyt
Suggests Me
Version	1.26.0
Since	Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source	prada_1.26.0.tar.gz
Windows Binary	prada_1.26.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	prada_1.26.0.tgz
Package Downloads Report	Download Stats

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