marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.7

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("marray")

To cite this package in a publication, start R and enter:

    citation("marray")

PDF		ExampleHTML.pdf
PDF	R Script	marray Normalization
PDF	R Script	marray Overview
PDF	R Script	marrayClasses Overview
PDF	R Script	marrayClasses Tutorial (short)
PDF	R Script	marrayInput Introduction
PDF	R Script	marrayPlots Overview
PDF		widget1.pdf
PDF		Reference Manual

biocViews	Microarray, TwoChannel, Preprocessing
Depends	R (>= 1.9.0), limma, methods
Imports
Suggests	tkWidgets
System Requirements
License	LGPL
URL	http://www.maths.usyd.edu.au/u/jeany/
Depends On Me	beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, nnNorm, OLIN, RMAGEML, stepNorm
Imports Me	arrayQuality, arrayQualityMetrics, GeneTraffic, nnNorm, OLIN, OLINgui, stepNorm, timecourse
Suggests Me	Agi4x44PreProcess, AgiMicroRna, DEGraph, hexbin, Mfuzz
Version	1.28.0
Since	Bioconductor 1.6 (R-2.1) or earlier

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