frma
Frozen RMA and Barcode
Bioconductor version: 2.7
Preprocessing and analysis for single microarrays and microarray batches.
Author: Matthew N. McCall <mmccall at jhsph.edu>, Rafael A. Irizarry <rafa at jhu.edu>
Maintainer: Matthew N. McCall <mmccall at jhsph.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("frma")
To cite this package in a publication, start R and enter:
citation("frma")
Documentation
| R Script | frma: Preprocessing for single arrays and array batches | |
| Reference Manual |
Details
| biocViews | Software, Microarray, Preprocessing |
| Depends | R (>= 2.10.0), Biobase(>= 2.6.0), affyPLM(>= 1.22.0) |
| Imports | Biobase, MASS, affy, affyPLM, methods, preprocessCore, utils |
| Suggests | hgu133afrmavecs, hgu133abarcodevecs, frmaExampleData |
| System Requirements | |
| License | GPL (>= 2) |
| URL | http://bioconductor.org |
| Depends On Me | |
| Imports Me | |
| Suggests Me | frmaTools |
| Version | 1.2.0 |
| Since | Bioconductor 2.6 (R-2.11) |
Package Downloads
| Package Source | frma_1.2.0.tar.gz |
| Windows Binary | frma_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | frma_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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