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OTUbase
Deals with OTU data
Bioconductor version: 2.7
Provides a platform for Operational Taxonomic Unit based analysis
Author: Daniel Beck, Matt Settles, and James A. Foster
Maintainer: Daniel Beck <danlbek at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("OTUbase")
To cite this package in a publication, start R and enter:
citation("OTUbase")
Documentation
| R Script | An introduction to OTUbase | |
| Reference Manual |
Details
| biocViews | Bioinformatics, HighThroughputSequencingData, DataImport |
| Depends | R (>= 2.9.0), methods, ShortRead(>= 1.4.0), Biobase, vegan |
| Imports | Biostrings, ShortRead, IRanges |
| Suggests | |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.7 (R-2.12) |
Package Downloads
| Package Source | OTUbase_1.0.0.tar.gz |
| Windows Binary | OTUbase_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | OTUbase_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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