GSEABase

Gene set enrichment data structures and methods

Bioconductor version: 2.7

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSEABase")

To cite this package in a publication, start R and enter:

    citation("GSEABase")

PDF	R Script	An introduction to GSEABase
PDF		Reference Manual

biocViews	Infrastructure, Bioinformatics
Depends	R (>= 2.6.0), Biobase, annotate, methods, graph
Imports	annotate, AnnotationDbi, Biobase, graph, methods, XML
Suggests	hgu95av2.db, GO.db, org.Hs.eg.db
System Requirements
License	Artistic-2.0
URL
Depends On Me	BicARE, HTSanalyzeR, PROMISE
Imports Me	Category, cellHTS2, GGBase, GGtools, HTSanalyzeR, PCpheno, PROMISE
Suggests Me	BiocCaseStudies, gage, GGtools, GlobalAncova, globaltest, GSEAlm, PGSEA
Version	1.12.2
Since	Bioconductor 2.1 (R-2.6)

Common Bioconductor workflows include:

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