pdInfoBuilder

Platform Design Information Package Builder

Bioconductor version: 2.6

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey and Matt Settles

Maintainer: Benilton Carvalho <carvalho at bclab.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pdInfoBuilder")

To cite this package in a publication, start R and enter:

    citation("pdInfoBuilder")

Documentation

PDF	R Script	Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF	R Script	PDInfo Package Building Affymetrix Mapping Chips
PDF		Reference Manual

Details

biocViews	Annotation, Infrastructure
Depends	R (>= 2.10.0), methods, Biobase(>= 2.5.5), RSQLite (>= 0.7-1), affxparser(>= 1.7.3), oligo(>= 1.9.19)
Imports	Biostrings(>= 2.13.50), IRanges(>= 1.3.89)
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.12.0
Since	Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source	pdInfoBuilder_1.12.0.tar.gz
Windows Binary	pdInfoBuilder_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	pdInfoBuilder_1.12.0.tgz
Package Downloads Report	Download Stats

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