Bioconductor version: 2.6
This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.
Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>
Maintainer: James W. MacDonald <jmacdon at med.umich.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("makecdfenv")
To cite this package in a publication, start R and enter:
citation("makecdfenv")
| R Script | makecdfenv primer | |
| Reference Manual |
| biocViews | OneChannel, DataImport, Preprocessing |
| Depends | R (>= 2.6.0), methods, utils |
| Imports | Biobase, affy |
| Suggests | |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | altcdfenvs |
| Imports Me | |
| Suggests Me | |
| Version | 1.26.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
| Package Source | makecdfenv_1.26.0.tar.gz |
| Windows Binary | makecdfenv_1.26.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | makecdfenv_1.26.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
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