affyio
Tools for parsing Affymetrix data files
Bioconductor version: 2.6
Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
Author: Benjamin Milo Bolstad <bmb at bmbolstad.com>
Maintainer: Benjamin Milo Bolstad <bmb at bmbolstad.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("affyio")
To cite this package in a publication, start R and enter:
citation("affyio")
Documentation
| Reference Manual |
Details
| biocViews | Microarray, DataImport, Infrastructure |
| Depends | R (>= 2.6.0), methods |
| Imports | |
| Suggests | |
| System Requirements | |
| License | LGPL (>= 2) |
| URL | |
| Depends On Me | affylmGUI, sscore |
| Imports Me | affy, crlmm, gcrma, makePlatformDesign, oligo, oligoClasses |
| Suggests Me | BufferedMatrixMethods |
| Version | 1.16.0 |
| Since | Bioconductor 1.8 (R-2.3) |
Package Downloads
| Package Source | affyio_1.16.0.tar.gz |
| Windows Binary | affyio_1.16.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | affyio_1.16.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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