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affyContam
structured corruption of affymetrix cel file data
Bioconductor version: 2.6
structured corruption of cel file data to demonstrate QA effectiveness
Author: V. Carey
Maintainer: V. Carey <stvjc at channing.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("affyContam")
To cite this package in a publication, start R and enter:
citation("affyContam")
Documentation
| R Script | affy contamination tools | |
| Reference Manual |
Details
| biocViews | Infrastructure, Bioinformatics |
| Depends | R (>= 2.7.0), tools, methods, utils, Biobase, affy, affydata |
| Imports | |
| Suggests | |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | arrayMvout |
| Suggests Me | |
| Version | 1.6.0 |
| Since | Bioconductor 2.3 (R-2.8) |
Package Downloads
| Package Source | affyContam_1.6.0.tar.gz |
| Windows Binary | affyContam_1.6.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | affyContam_1.6.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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