adSplit

Annotation-Driven Clustering

Bioconductor version: 2.6

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author: Claudio Lottaz, Joern Toedling

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("adSplit")

To cite this package in a publication, start R and enter:

    citation("adSplit")

Documentation

PDF	R Script	Annotation-Driven Clustering
PDF		bcb_logo.pdf
PDF		minerva_bcb.pdf
PDF		Rplots.pdf
PDF		Reference Manual

Details

biocViews	Microarray, Bioinformatics, Clustering
Depends	R (>= 2.1.0), methods (>= 2.1.0)
Imports	AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGG.db(>= 1.8.1), methods, multtest(>= 1.6.0), stats (>= 2.1.0)
Suggests	golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1)
System Requirements
License	GPL (>= 2)
URL	http://compdiag.molgen.mpg.de/software/index.shtml
Depends On Me
Imports Me
Suggests Me
Version	1.18.0
Since	Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source	adSplit_1.18.0.tar.gz
Windows Binary	adSplit_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	adSplit_1.18.0.tgz
Package Downloads Report	Download Stats

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