logitT
logit-t Package
Bioconductor version: 2.5
The logitT library implements the Logit-t algorithm introduced in --A high performance test of differential gene expression for oligonucleotide arrays-- by William J Lemon, Sandya Liyanarachchi and Ming You for use with Affymetrix data stored in an AffyBatch object in R.
Author: Tobias Guennel <tguennel at vcu.edu>
Maintainer: Tobias Guennel <tguennel at vcu.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("logitT")
To cite this package in a publication, start R and enter:
citation("logitT")
Documentation
| R Script | logitT primer | |
| Reference Manual |
Details
| biocViews | Microarray, DifferentialExpression |
| Depends | affy |
| Imports | |
| Suggests | SpikeInSubset |
| System Requirements | |
| License | GPL (>= 2) |
| URL | http://www.bioconductor.org |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.4.0 |
| Since | Bioconductor 2.3 (R-2.8) |
Package Downloads
| Package Source | logitT_1.4.0.tar.gz |
| Windows Binary | logitT_1.4.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | logitT_1.4.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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