exonmap

High level analysis of Affymetrix exon array data

Bioconductor version: 2.5

Provides fine grained annotation of Affymetrix exon arrays, including mappings between the array probes and probesets and the Ensembl exons, transcripts and genes they target.

Author: Crispin J Miller Michal Okoniewski, Tim Yates

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("exonmap")

To cite this package in a publication, start R and enter:

    citation("exonmap")

Documentation

PDF		exonmap.example.pdf
PDF		exonmap.pdf
PDF		INSTALL.pdf
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing, Transcription, DataImport, Bioinformatics, DifferentialExpression, Annotation, ReportWriting, Visualization
Depends	R (>= 2.0), affy(>= 1.23.4), genefilter, RColorBrewer, RMySQL (>= 0.6-0), DBI, methods
Imports
Suggests
System Requirements
License	GPL (>= 2)
URL	http://www.bioconductor.org, http://bioinformatics.picr.man.ac.uk
Depends On Me
Imports Me
Suggests Me
Version	2.4.0
Since	Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source	exonmap_2.4.0.tar.gz
Windows Binary	exonmap_2.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	exonmap_2.4.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center