cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: 2.5

Analysis of cell-based RNA interference screens. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras <ligia at ebi.ac.uk>, Wolfgang Huber <huber at ebi.ac.uk>, Michael Boutros <m.boutros at dkfz.de>, Gregoire Pau <gpau at ebi.ac.uk>, Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <fhahne at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cellHTS2")

To cite this package in a publication, start R and enter:

    citation("cellHTS2")

Documentation

PDF	R Script	Main vignette (complete version): End-to-end analysis of cell-based screens
PDF	R Script	Main vignette: End-to-end analysis of cell-based screens
PDF	R Script	Supplement: enhancer-suppressor screens
PDF	R Script	Supplement: multi-channel assays
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Preprocessing, Visualization
Depends	R (>= 2.6.0), RColorBrewer, Biobase(>= 2.5.5), methods, genefilter(>= 1.11.2), splots(>= 1.11.1), vsn(>= 3.0.15), hwriter (>= 0.90)
Imports	prada, GSEABase, Category
Suggests	locfit (>= 1.5-3)
System Requirements
License	Artistic-2.0
URL	http://www.dkfz.de/signaling, http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me
Version	2.10.5
Since	Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source	cellHTS2_2.10.5.tar.gz
Windows Binary	cellHTS2_2.10.5.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	cellHTS2_2.10.5.tgz
Package Downloads Report	Download Stats

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