ChromHeatMap

Heat map plotting by genome coordinate

Bioconductor version: 2.5

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes, and thereby genes, of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChromHeatMap")

To cite this package in a publication, start R and enter:

    citation("ChromHeatMap")

Documentation

PDF	R Script	Plotting expression data with ChromHeatMap
PDF		Reference Manual

Details

biocViews	Visualization
Depends	R (>= 2.9.0), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0), hgu95av2.db
Imports	annotate, AnnotationDbi, Biobase, graphics, grDevices, methods, stats, IRanges, rtracklayer
Suggests	ALL
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0
Since	Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source	ChromHeatMap_1.0.0.tar.gz
Windows Binary	ChromHeatMap_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ChromHeatMap_1.0.0.tgz
Package Downloads Report	Download Stats

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