ChIPsim

Simulation of ChIP-seq experiments

Bioconductor version: 2.5

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at csiro.au>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChIPsim")

To cite this package in a publication, start R and enter:

    citation("ChIPsim")

Documentation

PDF	R Script	Simulating ChIP-seq experiments
PDF		Reference Manual

Details

biocViews	Infrastructure, Bioinformatics, ChIPseq
Depends	Biostrings
Imports	IRanges, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests	actuar, zoo
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0
Since	Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source	ChIPsim_1.0.0.tar.gz
Windows Binary	ChIPsim_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ChIPsim_1.0.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center