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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("virtualArray")
In most cases, you don't need to download the package archive at all.
virtualArray
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see virtualArray.
Build virtual array from different microarray platforms
Bioconductor version: 2.12
This package permits the user to combine raw data of different microarray platforms into one virtual array. It consists of several functions that act subsequently in a semi-automatic way. Doing as much of the data combination and letting the user concentrate on analysing the resulting virtual array.
Author: Andreas Heider
Maintainer: Andreas Heider <aheider at trm.uni-leipzig.de>
Citation (from within R,
enter citation("virtualArray")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("virtualArray")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("virtualArray")
| R Script | virtualArray Vignette | |
| virtualArray-016.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, DataImport, Microarray, MultipleComparisons, OneChannel, Preprocessing, Software |
| Version | 1.4.1 |
| In Bioconductor since | BioC 2.10 (R-2.15) (4 years) |
| License | GPL-3 |
| Depends | R (>= 2.15.0), BiocGenerics, methods, plyr, preprocessCore |
| Imports | affy, affyPLM, AnnotationDbi, Biobase, gcrma, GEOquery, graphics, methods, reshape2, stats, utils, tseries, outliers |
| LinkingTo | |
| Suggests | affydata, plier, limma, lumi, org.Hs.eg.db |
| SystemRequirements | |
| Enhances | multicore, BiocParallel |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | virtualArray_1.4.1.tar.gz |
| Windows Binary | virtualArray_1.4.1.zip |
| Mac OS X 10.6 (Snow Leopard) | virtualArray_1.4.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/virtualArray/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/virtualArray/ |
| Package Downloads Report | Download Stats |
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