To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DOSE")
In most cases, you don't need to download the package archive at all.
DOSE
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see DOSE.
Disease Ontology Semantic and Enrichment analysis
Bioconductor version: 2.12
Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.
Author: Guangchuang Yu, Li-Gen Wang
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R,
enter citation("DOSE")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DOSE")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DOSE")
| R Script | An introduction to DOSE | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Bioinformatics, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), ggplot2 |
| Imports | methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, org.Hs.eg.db, igraph, scales, reshape2, graphics, GOSemSim |
| LinkingTo | |
| Suggests | clusterProfiler, ReactomePA |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | ReactomePA |
| Imports Me | clusterProfiler |
| Suggests Me | GOSemSim |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DOSE_1.6.0.tar.gz |
| Windows Binary | DOSE_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | DOSE_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DOSE/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/DOSE/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
