mBPCR

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: Development (2.8)

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

Author: P.M.V. Rancoita, with contributions from M. Hutter

Maintainer: P.M.V. Rancoita

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("mBPCR")    

Documentation

PDF

R Script

mBPCR

Reference Manual

Details

biocViews	aCGH, SNP, Microarray, CopyNumberVariants, Bioinformatics
Depends	oligoClasses, SNPchip
Imports	Biobase
Suggests	xtable
System Requirements
License	GPL (>= 2)
URL	http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
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Version	1.5.3

Package Downloads

Package Source	mBPCR_1.5.3.tar.gz
Windows Binary	mBPCR_1.5.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	mBPCR_1.5.3.tgz
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