############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDistributions ### ############################################################################## ############################################################################## * checking for file ‘GenomicDistributions/DESCRIPTION’ ... OK * preparing ‘GenomicDistributions’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘full-power.Rmd’ using rmarkdown --- finished re-building ‘full-power.Rmd’ --- re-building ‘intro.Rmd’ using rmarkdown Warning: stack imbalance in '::', 65 then 67 Warning: stack imbalance in '=', 63 then 65 Warning: stack imbalance in 'withVisible', 57 then 59 Quitting from intro.Rmd:174-177 [multiple-proportional-partition-plot] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `foverlaps()`: ! attempt access index -1/2673 in VECTOR_ELT --- Backtrace: ▆ 1. └─GenomicDistributions::calcPartitionsRef(queryList, "hg19", bpProportion = TRUE) 2. └─GenomicDistributions::calcPartitions(query, partitionList, bpProportion = bpProportion) 3. └─base::lapply(...) 4. └─GenomicDistributions (local) FUN(X[[i]], ...) 5. └─base::lapply(partitionList, overlapWidths, query) 6. └─GenomicDistributions (local) FUN(X[[i]], ...) 7. └─data.table::foverlaps(partitionDT, queryDT, nomatch = NULL) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'intro.Rmd' failed with diagnostics: attempt access index -1/2673 in VECTOR_ELT --- failed re-building ‘intro.Rmd’ SUMMARY: processing the following file failed: ‘intro.Rmd’ Error: Vignette re-building failed. Execution halted