| Back to --- experimental! --- GPU-enabled build/check report for BioC 3.21 Report updated every 6 hours | 
This page was generated on 2025-10-16 07:45 -0400 (Thu, 16 Oct 2025).
| Hostname: | kakapo1 | 
| OS: | Linux (Ubuntu 24.04.3 LTS) | 
| Arch: | x86_64 | 
| Platform: | x86_64-linux-gnu | 
| R version: | 4.5.1 (2025-06-13) -- "Great Square Root" | 
| R environment variables: | Renviron.bioc | 
| R variable (VAR) | Value ('R CMD config <VAR>' output) | 
| CC | gcc -std=gnu2x | 
| CFLAGS | -g -O2 -Wall -Werror=format-security | 
| CPICFLAGS | -fpic | 
| Please refer to 'R CMD config -h' for the meaning of these variables | |
Compiler version ('gcc -std=gnu2x --version' output):
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
| R variable (VAR) | Value ('R CMD config <VAR>' output) | 
| CXX | g++ -std=gnu++17 | 
| CXXFLAGS | -g -O2 -Wall -Werror=format-security | 
| CXXPICFLAGS | -fpic | 
| Please refer to 'R CMD config -h' for the meaning of these variables | |
Compiler version ('g++ -std=gnu++17 --version' output):
g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
| R variable (VAR) | Value ('R CMD config <VAR>' output) | 
| CXX11 | g++ | 
| CXX11FLAGS | -g -O2 -Wall -Werror=format-security | 
| CXX11PICFLAGS | -fpic | 
| CXX11STD | -std=gnu++11 | 
| Please refer to 'R CMD config -h' for the meaning of these variables | |
Compiler version ('g++ --version' output):
g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
| R variable (VAR) | Value ('R CMD config <VAR>' output) | 
| CXX14 | g++ | 
| CXX14FLAGS | -g -O2 -Wall -Werror=format-security | 
| CXX14PICFLAGS | -fpic | 
| CXX14STD | -std=gnu++14 | 
| Please refer to 'R CMD config -h' for the meaning of these variables | |
Compiler version ('g++ --version' output):
g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
| R variable (VAR) | Value ('R CMD config <VAR>' output) | 
| CXX17 | g++ | 
| CXX17FLAGS | -g -O2 -Wall -Werror=format-security | 
| CXX17PICFLAGS | -fpic | 
| CXX17STD | -std=gnu++17 | 
| Please refer to 'R CMD config -h' for the meaning of these variables | |
Compiler version ('g++ --version' output):
g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 Copyright (C) 2023 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
java version ('java --version' output):
openjdk 21.0.7 2025-04-15 OpenJDK Runtime Environment (build 21.0.7+6-Ubuntu-0ubuntu124.04) OpenJDK 64-Bit Server VM (build 21.0.7+6-Ubuntu-0ubuntu124.04, mixed mode, sharing)
pandoc version ('pandoc --version' output):
pandoc 3.1.3 Features: -server +lua Scripting engine: Lua 5.4 User data directory: /home/biocbuild/.local/share/pandoc Copyright (C) 2006-2023 John MacFarlane. Web: https://pandoc.org This is free software; see the source for copying conditions. There is no warranty, not even for merchantability or fitness for a particular purpose.
nvcc version ('nvcc --version' output):
nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2025 NVIDIA Corporation Built on Wed_Apr__9_19:24:57_PDT_2025 Cuda compilation tools, release 12.9, V12.9.41 Build cuda_12.9.r12.9/compiler.35813241_0
nvidia-smi version ('nvidia-smi --version' output):
Thu Oct 16 08:48:43 2025       
+-----------------------------------------------------------------------------------------+
| NVIDIA-SMI 575.51.03              Driver Version: 575.51.03      CUDA Version: 12.9     |
|-----------------------------------------+------------------------+----------------------+
| GPU  Name                 Persistence-M | Bus-Id          Disp.A | Volatile Uncorr. ECC |
| Fan  Temp   Perf          Pwr:Usage/Cap |           Memory-Usage | GPU-Util  Compute M. |
|                                         |                        |               MIG M. |
|=========================================+========================+======================|
|   0  NVIDIA L40S                    Off |   00000000:B5:00.0 Off |                    0 |
| N/A   32C    P8             33W /  350W |       0MiB /  46068MiB |      0%      Default |
|                                         |                        |                  N/A |
+-----------------------------------------+------------------------+----------------------+
                                                                                         
+-----------------------------------------------------------------------------------------+
| Processes:                                                                              |
|  GPU   GI   CI              PID   Type   Process name                        GPU Memory |
|        ID   ID                                                               Usage      |
|=========================================================================================|
|  No running processes found                                                             |
+-----------------------------------------------------------------------------------------+
More information might be added in the future...