orf800 {yeastCC} | R Documentation

## Cell cycle regulated genes from Spellman et al. (1998)

### Description

Vector of ORF names for the 800 cell cycle regulated genes identified by the analysis of Spellman et al. (1998). The expression measures and sample descriptions are stored in the `exprSet` instance `yeastCC`.

### Usage

    data(orf800)

### Format

The format is: chr [1:800] "YAL022C" "YAL040C" "YAL053W" "YAL067C" "YAR003W" "YAR007C" ...

### Source

The 800 ORF names were obtained from the file "CellCycle98.xls" on the Yeast Cell Cycle Analysis Project website (http://genome-www.stanford.edu/cellcycle/). The raw data (images, TIFF) and processed data "combine.txt" used to create the `exprSet` instance `yeastCC` are also available on the website. Gene annotation information is available from the Saccharomyces Genome Database (SGD, http://genome-www.stanford.edu/Saccharomyces/gene_list.shtml). The script "createYeastCC.R" for generating the `yeastCC` package is available in ../doc.

### References

Spellman et al. (1998). Comprehensive Identification of Cell Cycle-regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization. Molecular Biology of the Cell, 9: 3273-3297 (../doc).

### Examples

    data(orf800)

[Package yeastCC version 0.5.1 Index]