mouseLLMappingsGO2LL     package:mouseLLMappings     R Documentation

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_L_o_c_u_s_L_i_n_k _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     mouseLLMappingsGO2LL maps Gene Ontology (GO) ids to LocusLink ids
     for genes whose products have the functions corresponding to the
     GO ids

_D_e_t_a_i_l_s:

     This is an environment object containing key and value pairs. Keys
     are GO ids and values are LocusLink ids. Values are vectors of
     length 1 or more depending on whether a GO id can be mapped to one
     or more LocusLink ids. Names of values are evidence code that
     indicate the type of evidences that support associations between
     genes and GO functions. 

     The evidence codes in use include:

     IMP: inferred from mutant phenotype   IGI: inferred from genetic
     interaction IPI: inferred from physical interaction   ISS:
     inferred from sequence similarity  IDA: inferred from direct assay
       IEP: inferred from expression pattern   IEA: inferred from
     electronic annotation   TAS: traceable author statement   NAS:
     non-traceable author statement   ND: no biological data available 
      IC: inferred by curator

     Mappings were derived from data provided by:

     Entrez Gene: Not available

     Package built: Tue Oct  4 19:38:10 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: ftp://ftp.ncbi.nih.gov/refseq/LocusLink/LL_tmpl.gz>

_E_x_a_m_p_l_e_s:

             require("annotate") || stop("annotate unavailable")
             xx <- as.list(mouseLLMappingsGO2LL)
             if(length(xx) > 0){
                     # Get the value of the first key
                     xx[[1]]
                     # Get the values  for a few keys
                     if(length(xx) >= 3){
                             xx[1:3]
                     }
             }

