Changes in version 1.3.3                        

  - Add ssTaxSEA() function for single sample enrichment testing and
    documentation

                        Changes in version 1.3.2                        

  - Add taxon_rank_sets() helper with documentation and tests
  - Add functionality to interact with tse objects

TaxSEA 1.3.1

  - Internal refactor to modular analysis pipeline
  - Added infrastructure for over-representation analysis (ORA).
  - Improved internal input preparation and validation.

Version 1.1.8 (2025-08-12)

  - Added output for all taxon sets
  - Fixed spelling in GutMGene_producers_of_Phenyalanine

Version 1.1.7 (2025-08-11)

  - Added Gut-Brain modules database from Valles-Colomer et al. Nature
    Microbiology. 2019.

Version 1.1.6 (2025-08-08)

  - Bug fixes

Version 1.1.5 (2025-08-06)

  - Fixed bug in BacDive Database

Version 1.1.4 (2025-08-05)

  - Added BacDive Database
  - Added Blossum and VANISH taxon sets in disease associations category

Version 0.99.2 (2025-02-20)

  - Added ability to test custom taxon sets using custom_db parameter.
  - Removed deprecated plotting.R file.
  - TaxSEA now reports the KS test statistic for each taxon set.

Version 0.99.1 (2025-02-11)

  - Bringing into line with requirements for BioConductor submission