ASpli
This is the development version of ASpli; for the stable release version, see ASpli.
Analysis of Alternative Splicing Using RNA-Seq
Bioconductor version: Development (3.23)
Integrative pipeline for the analysis of alternative splicing using RNAseq.
Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz
Maintainer: Ariel Chernomoretz <algo107 at gmail.com>
Citation (from within R, enter
citation("ASpli")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ASpli")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
| Version | 2.19.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| License | GPL |
| Depends | methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi |
| Imports | GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply, txdbmaker |
| System Requirements | |
| URL |
See More
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ASpli |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASpli |
| Package Short Url | https://bioconductor.org/packages/ASpli/ |
| Package Downloads Report | Download Stats |