waveTiling

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see waveTiling.

Wavelet-Based Models for Tiling Array Transcriptome Analysis


Bioconductor version: 3.9

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>

Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>

Citation (from within R, enter citation("waveTiling")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("waveTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("waveTiling")
The waveTiling package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, TimeCourse
Version 1.26.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL (>=2)
Depends oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges
System Requirements
URL https://r-forge.r-project.org/projects/wavetiling/
See More
Suggests BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22
Linking To
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package waveTiling_1.26.0.tar.gz
Windows Binary waveTiling_1.26.0.zip
Mac OS X 10.11 (El Capitan) waveTiling_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/waveTiling
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/waveTiling
Bioc Package Browser https://code.bioconductor.org/browse/waveTiling/
Package Short Url https://bioconductor.org/packages/waveTiling/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive