tweeDEseq

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see tweeDEseq.

RNA-seq data analysis using the Poisson-Tweedie family of distributions


Bioconductor version: 3.9

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Citation (from within R, enter citation("tweeDEseq")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tweeDEseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")
tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.30.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports MASS, limma, edgeR, parallel, cqn
System Requirements
URL http://www.creal.cat/jrgonzalez/software.htm
See More
Suggests tweeDEseqCountData, xtable
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tweeDEseq_1.30.0.tar.gz
Windows Binary tweeDEseq_1.30.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) tweeDEseq_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tweeDEseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tweeDEseq
Bioc Package Browser https://code.bioconductor.org/browse/tweeDEseq/
Package Short Url https://bioconductor.org/packages/tweeDEseq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive