srnadiff

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see srnadiff.

Differential Expression of Small RNA-Seq


Bioconductor version: 3.9

Differential expression of small RNA-seq when reference annotation is not given.

Author: Zytnicki Matthias [aut, cre]

Maintainer: Matthias Zytnicki <matthias.zytnicki at inra.fr>

Citation (from within R, enter citation("srnadiff")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("srnadiff")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("srnadiff")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Coverage, DifferentialExpression, Epigenetics, GeneExpression, ImmunoOncology, Preprocessing, SmallRNA, Software, StatisticalMethod
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-3
Depends R (>= 3.5)
Imports Rcpp (>= 0.12.8), methods, utils, devtools, BiocStyle, S4Vectors, GenomeInfoDb, rtracklayer, SummarizedExperiment, IRanges, GenomicRanges, DESeq2, Rsamtools, GenomicFeatures, GenomicAlignments, ggplot2, BiocParallel
System Requirements C++11
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Suggests knitr, rmarkdown, testthat
Linking To Rcpp
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package srnadiff_1.4.0.tar.gz
Windows Binary srnadiff_1.4.0.zip
Mac OS X 10.11 (El Capitan) srnadiff_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/srnadiff
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/srnadiff
Bioc Package Browser https://code.bioconductor.org/browse/srnadiff/
Package Short Url https://bioconductor.org/packages/srnadiff/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive