simulatorZ

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see simulatorZ.

Simulator for Collections of Independent Genomic Data Sets


Bioconductor version: 3.9

simulatorZ is a package intended primarily to simulate collections of independent genomic data sets, as well as performing training and validation with predicting algorithms. It supports ExpressionSet and RangedSummarizedExperiment objects.

Author: Yuqing Zhang, Christoph Bernau, Levi Waldron

Maintainer: Yuqing Zhang <zhangyuqing.pkusms at gmail.com>

Citation (from within R, enter citation("simulatorZ")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("simulatorZ")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simulatorZ")
SimulatorZ PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, Survival
Version 1.18.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 3.5), Biobase, SummarizedExperiment, survival, CoxBoost, BiocGenerics
Imports graphics, stats, gbm, Hmisc, GenomicRanges, methods
System Requirements
URL https://github.com/zhangyuqing/simulatorZ
Bug Reports https://github.com/zhangyuqing/simulatorZ
See More
Suggests RUnit, BiocStyle, curatedOvarianData, parathyroidSE, superpc
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me doppelgangR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package simulatorZ_1.18.0.tar.gz
Windows Binary simulatorZ_1.18.0.zip
Mac OS X 10.11 (El Capitan) simulatorZ_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/simulatorZ
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/simulatorZ
Bioc Package Browser https://code.bioconductor.org/browse/simulatorZ/
Package Short Url https://bioconductor.org/packages/simulatorZ/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive