sigaR

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigaR.

Statistics for Integrative Genomics Analyses in R


Bioconductor version: 3.9

Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.

Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Citation (from within R, enter citation("sigaR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigaR")
sigaR PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH
Version 1.32.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License GPL (>= 2)
Depends Biobase, CGHbase, methods, mvtnorm
Imports corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats
System Requirements
URL http://www.few.vu.nl/~wvanwie
See More
Suggests CGHcall
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigaR_1.32.0.tar.gz
Windows Binary sigaR_1.32.0.zip
Mac OS X 10.11 (El Capitan) sigaR_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sigaR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigaR
Bioc Package Browser https://code.bioconductor.org/browse/sigaR/
Package Short Url https://bioconductor.org/packages/sigaR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive