sigPathway

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigPathway.

Pathway Analysis


Bioconductor version: 3.9

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at alum.mit.edu>

Citation (from within R, enter citation("sigPathway")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigPathway")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigPathway")
sigPathway PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, MultipleComparison, Software
Version 1.52.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL-2
Depends R (>= 2.10)
Imports
System Requirements
URL http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html
See More
Suggests hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)
Linking To
Enhances
Depends On Me tRanslatome
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigPathway_1.52.0.tar.gz
Windows Binary sigPathway_1.52.0.zip
Mac OS X 10.11 (El Capitan) sigPathway_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sigPathway
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigPathway
Bioc Package Browser https://code.bioconductor.org/browse/sigPathway/
Package Short Url https://bioconductor.org/packages/sigPathway/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive