shinyMethyl

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see shinyMethyl.

Interactive visualization for Illumina methylation arrays


Bioconductor version: 3.9

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("shinyMethyl")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("shinyMethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")
shinyMethyl: interactive visualization of Illumina 450K methylation arrays PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.20.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.3.2), shiny (>= 0.13.2), minfi(>= 1.18.2), IlluminaHumanMethylation450kmanifest, matrixStats, R (>= 3.0.0)
Imports RColorBrewer
System Requirements
URL
See More
Suggests shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyMethyl_1.20.0.tar.gz
Windows Binary shinyMethyl_1.20.0.zip
Mac OS X 10.11 (El Capitan) shinyMethyl_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/shinyMethyl
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/shinyMethyl
Bioc Package Browser https://code.bioconductor.org/browse/shinyMethyl/
Package Short Url https://bioconductor.org/packages/shinyMethyl/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive