rnaseqcomp

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rnaseqcomp.

Benchmarks for RNA-seq Quantification Pipelines


Bioconductor version: 3.9

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng <tengmx at gmail.com>

Citation (from within R, enter citation("rnaseqcomp")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaseqcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaseqcomp")
The rnaseqcomp user's guide PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews QualityControl, RNASeq, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-3
Depends R (>= 3.2.0)
Imports RColorBrewer, methods
System Requirements
URL https://github.com/tengmx/rnaseqcomp
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me SummarizedBenchmark
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rnaseqcomp_1.14.0.tar.gz
Windows Binary rnaseqcomp_1.14.0.zip
Mac OS X 10.11 (El Capitan) rnaseqcomp_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rnaseqcomp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rnaseqcomp
Bioc Package Browser https://code.bioconductor.org/browse/rnaseqcomp/
Package Short Url https://bioconductor.org/packages/rnaseqcomp/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive