pathprint

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.

Pathway fingerprinting for analysis of gene expression arrays


Bioconductor version: 3.9

Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.

Author: Gabriel Altschuler, Sokratis Kariotis

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pathprint")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathprint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathprint")
pathprint PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, KEGG, Reactome, Software, Transcription
Version 1.14.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL
Depends R (>= 3.4)
Imports stats, utils
System Requirements
URL
See More
Suggests ALL, GEOquery, pathprintGEOData, SummarizedExperiment
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me pathprintGEOData
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathprint_1.14.0.tar.gz
Windows Binary pathprint_1.14.0.zip
Mac OS X 10.11 (El Capitan) pathprint_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pathprint
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathprint
Bioc Package Browser https://code.bioconductor.org/browse/pathprint/
Package Short Url https://bioconductor.org/packages/pathprint/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive