nucleR

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see nucleR.

Nucleosome positioning package for R


Bioconductor version: 3.9

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Diego Gallego <diego.gallego at irbbarcelona.org>

Citation (from within R, enter citation("nucleR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nucleR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")
Vignette Title PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version 2.16.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License LGPL (>= 3)
Depends methods
Imports Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils
System Requirements
URL
See More
Suggests Starr, BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nucleR_2.16.0.tar.gz
Windows Binary nucleR_2.16.0.zip
Mac OS X 10.11 (El Capitan) nucleR_2.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nucleR
Bioc Package Browser https://code.bioconductor.org/browse/nucleR/
Package Short Url https://bioconductor.org/packages/nucleR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive